So I finally got my gasket, and go to install the front bevel gear case, and discover some wires that come out of the same place as the stator wires (I'm assuming they go to the pickup coils?) were pinched between the bottom of the gearcase and the engine, and the insulation is worn off one of them. I rerouted both those and the yellow stator wires above the gearcase, and zip tied them in place. Engine starts and runs ok, I will check later to see what color the wires are, they were soaked in oil.
Just posted this in case anyone is having ignition problems, these wires were originally in a bad place, and could be easily damaged, and the damage would not be visible.