It appears to have been the fuel line. Thanks again everyone.
My bike isn't overheating but it's running a bit hot(usually hits and stays around the middle of the gauge by the little temp. symbol), I'm going to get the cap/system pressure tested this weekend.
I flushed the coolant system a few times. It was pretty nasty but it cleared up. I also did my best to eliminate any bubbles by rocking the bike around. I hadn't done that previously, we'll see tomorrow if this solves anything.
Last edited by thepoweroflard; 08-20-2009 at 04:34 AM.